PH01001047G0180's details annotation
1.Annotation
ICBR annotation: bifunctional aspartokinase/homoserine dehydrogenase, chloroplast precursor, putative, expressed
Blast result AT4G19710 : 8.60E-59
Blast annotation: aspartate kinase-homoserine dehydrogenase ii
2.Location
Scaffold: PH01001047
Strand: +
| Region | Start | End |
| gene | 148189 | 151531 |
| mRNA | 148189 | 151531 |
| exon | 148189 | 149138 |
| exon | 149974 | 150057 |
| exon | 150127 | 150219 |
| exon | 150752 | 151531 |
| CDS | 149040 | 149138 |
| CDS | 149974 | 150057 |
| CDS | 150127 | 150219 |
| CDS | 150752 | 150997 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000462 | exocyst, microtubule binding, Ribosome_biogenesis_in_eukaryotes microtubule cytoskeleton organization, exocytosis, cytokinesis cellular amino acid metabolic process, |
| coexpression network | CFinderM000797 | threonyl-tRNA aminoacylation, tRNA aminoacylation, microtubule cytoskeleton organization, cytokinesis Aminoacyl-tRNA_biosynthesis Ribosome_biogenesis_in_eukaryotes threonine-tRNA ligase activity, cellular amino acid metabolic process, tRNA aminoacylation for protein translation, ligase activity, forming aminoacyl-tRNA and related compounds, microtubule binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00742.18 | Homoserine_dh | 32 | 163 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006520 | cellular amino acid metabolic process |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.