PH01001051G0170's details annotation
1.Annotation
ICBR annotation: BHLH transcription factor, putative, expressed
Blast result AT5G48560 : 8.80E-53
Blast annotation: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
2.Location
Scaffold: PH01001051
Strand: +
| Region | Start | End |
| gene | 141874 | 149080 |
| mRNA | 141874 | 149080 |
| exon | 141874 | 143000 |
| exon | 143080 | 143295 |
| exon | 143390 | 143455 |
| exon | 143554 | 143622 |
| exon | 143747 | 143821 |
| exon | 143925 | 144149 |
| exon | 144231 | 144324 |
| exon | 145754 | 145975 |
| exon | 146357 | 146434 |
| exon | 147522 | 147630 |
| exon | 148337 | 149080 |
| CDS | 142329 | 143000 |
| CDS | 143080 | 143295 |
| CDS | 143390 | 143455 |
| CDS | 143554 | 143622 |
| CDS | 143747 | 143821 |
| CDS | 143925 | 144149 |
| CDS | 144231 | 144324 |
| CDS | 145754 | 145975 |
| CDS | 146357 | 146434 |
| CDS | 147522 | 147630 |
| CDS | 148337 | 148394 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000498 | phosphatidylinositol_dephosphorylation bHLH Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001669 | CBM49 Carbohydrate-Binding_Modules GH9 Glycoside_Hydrolases phosphatidylinositol_dephosphorylation |
| coexpression network | CFinderM001700 | leucine biosynthetic process, tRNA methylation, tRNA (guanine-N1-)-methyltransferase activity, 2-isopropylmalate synthase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bHLH |
| Transcription_Regulator(from PlantTFDB) | bHLH |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00010.25 | HLH | 290 | 337 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.