PH01001053G0380's details annotation
1.Annotation
ICBR annotation: ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
Blast result AT5G10790 : 6.90E-27
Blast annotation: ubiquitin-specific protease 22
2.Location
Scaffold: PH01001053
Strand: -
| Region | Start | End |
| gene | 217502 | 224774 |
| mRNA | 217502 | 224774 |
| exon | 217502 | 219081 |
| exon | 221250 | 221637 |
| exon | 221841 | 221889 |
| exon | 222494 | 224774 |
| CDS | 218725 | 219081 |
| CDS | 221250 | 221637 |
| CDS | 221841 | 221889 |
| CDS | 222494 | 222998 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00443.28 | UCH | 173 | 257 |
| PF11955.7 | PORR | 333 | 429 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004221 | ubiquitin thiolesterase activity |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.