PH01001056G0390's details annotation
1.Annotation
ICBR annotation: transporter, monovalent cation:proton antiporter-2 family, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01001056
Strand: -
| Region | Start | End |
| gene | 258446 | 262668 |
| mRNA | 258446 | 262668 |
| exon | 258446 | 258842 |
| exon | 259114 | 259201 |
| exon | 260235 | 260279 |
| exon | 260402 | 260479 |
| exon | 260568 | 260756 |
| exon | 260998 | 261136 |
| exon | 261690 | 262668 |
| CDS | 258733 | 258842 |
| CDS | 259114 | 259201 |
| CDS | 260235 | 260279 |
| CDS | 260402 | 260479 |
| CDS | 260568 | 260756 |
| CDS | 260998 | 261136 |
| CDS | 261690 | 261778 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00999.20 | Na_H_Exchanger | 73 | 181 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006812 | cation transport |
| GO:0015299 | solute:hydrogen antiporter activity |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.