PH01001056G0640's details annotation
1.Annotation
ICBR annotation: 1,3-beta-glucan synthase component domain containing protein, expressed
Blast result AT2G31960 : 2.70E-87
Blast annotation: glucan synthase-like 3
2.Location
Scaffold: PH01001056
Strand: -
| Region | Start | End |
| gene | 405002 | 407897 |
| mRNA | 405002 | 407897 |
| exon | 405002 | 405267 |
| exon | 405864 | 405974 |
| exon | 406095 | 406188 |
| exon | 406265 | 406389 |
| exon | 406819 | 406919 |
| exon | 407415 | 407897 |
| CDS | 405172 | 405267 |
| CDS | 405864 | 405974 |
| CDS | 406095 | 406188 |
| CDS | 406265 | 406389 |
| CDS | 406819 | 406919 |
| CDS | 407415 | 407619 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04652.15 | Vta1 | 48 | 180 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003843 | 1,3-beta-D-glucan synthase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.