Gene details

Annotation of co-expression genes

PH01001057G0520's details annotation

1.Annotation

ICBR annotation: DNA repair protein Rad51, putative, expressed

Blast result AT2G28560 : 2.40E-76
Blast annotation: DNA repair (Rad51) family protein

2.Location

Scaffold: PH01001057
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM001614	nucleotide binding, ATP binding, chromosome organization, valyl-tRNA aminoacylation, valine-tRNA ligase activity, GPI anchor biosynthetic process, chromosome, endoplasmic reticulum membrane, DNA metabolic process, aminoacyl-tRNA_editing_activity DNA-dependent ATPase activity, Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis Homologous_recombination Aminoacyl-tRNA_biosynthesis tRNA aminoacylation for protein translation,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF08423.10	Rad51	36	170

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Homologous recombination	RAD51-like protein 1	ko03440	K10869

10.Gene Ontology

GO Accession	GO Annotation
GO:0000166	nucleotide binding
GO:0003677	DNA binding
GO:0005524	ATP binding
GO:0006259	DNA metabolic process
GO:0008094	DNA-dependent ATPase activity
GO:0017111	nucleoside-triphosphatase activity

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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