PH01001065G0020's details annotation
1.Annotation
ICBR annotation: phosphoribosyl transferase, putative, expressed
Blast result AT1G27450 : 8.80E-80
Blast annotation: adenine phosphoribosyl transferase 1
2.Location
Scaffold: PH01001065
Strand: +
| Region | Start | End |
| gene | 6118 | 8996 |
| mRNA | 6118 | 8996 |
| exon | 6118 | 6344 |
| exon | 6987 | 7097 |
| exon | 7238 | 7330 |
| exon | 7437 | 7586 |
| exon | 8046 | 8104 |
| exon | 8817 | 8996 |
| CDS | 6275 | 6344 |
| CDS | 6987 | 7097 |
| CDS | 7238 | 7330 |
| CDS | 7437 | 7586 |
| CDS | 8046 | 8104 |
| CDS | 8817 | 8870 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00156.26 | Pribosyltran | 32 | 165 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Purine metabolism | adenine phosphoribosyltransferase [EC:2.4.2.7] | ko00230 | K00759 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003999 | adenine phosphoribosyltransferase activity |
| GO:0005737 | cytoplasm |
| GO:0006168 | adenine salvage |
| GO:0009116 | nucleoside metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.