PH01001086G0140's details annotation
1.Annotation
ICBR annotation: cleavage and polyadenylation specificity factor subunit 5, putative, expressed
Blast result AT4G29820 : 1.70E-73
Blast annotation: homolog of CFIM-25
2.Location
Scaffold: PH01001086
Strand: +
| Region | Start | End |
| gene | 139746 | 142712 |
| mRNA | 139746 | 142712 |
| exon | 139746 | 141356 |
| exon | 141450 | 141495 |
| exon | 141714 | 141807 |
| exon | 141970 | 142055 |
| exon | 142333 | 142443 |
| exon | 142517 | 142712 |
| CDS | 141190 | 141356 |
| CDS | 141450 | 141495 |
| CDS | 141714 | 141807 |
| CDS | 141970 | 142055 |
| CDS | 142333 | 142443 |
| CDS | 142517 | 142588 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000097 | GT59 GlycosylTransferases mRNA_cleavage_factor_complex Other_types_of_O-glycan_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13869.5 | NUDIX_2 | 27 | 217 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | cleavage and polyadenylation specificity factor subunit 5 | ko03015 | K14397 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003729 | mRNA binding |
| GO:0005849 | mRNA cleavage factor complex |
| GO:0006378 | mRNA polyadenylation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.