PH01001098G0250's details annotation
1.Annotation
ICBR annotation: 40S ribosomal protein S15, putative, expressed
Blast result AT5G09510 : 3.10E-72
Blast annotation: Ribosomal protein S19 family protein
2.Location
Scaffold: PH01001098
Strand: +
| Region | Start | End |
| gene | 190179 | 194658 |
| mRNA | 190179 | 194658 |
| exon | 190179 | 190296 |
| exon | 190379 | 190533 |
| exon | 190647 | 190704 |
| exon | 193059 | 193223 |
| exon | 193652 | 194658 |
| CDS | 190294 | 190296 |
| CDS | 190379 | 190533 |
| CDS | 190647 | 190704 |
| CDS | 193059 | 193223 |
| CDS | 193652 | 193900 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00203.20 | Ribosomal_S19 | 52 | 137 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein S15e | ko03011 | K02958 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0003735 | structural constituent of ribosome |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
| GO:0015935 | small ribosomal subunit |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.