PH01001101G0230's details annotation
1.Annotation
ICBR annotation: glycosyl transferase, group 1 domain containing protein, expressed
Blast result AT5G01220 : 1.00E-154
Blast annotation: sulfoquinovosyldiacylglycerol 2
2.Location
Scaffold: PH01001101
Strand: -
| Region | Start | End |
| gene | 180122 | 188887 |
| mRNA | 180122 | 188887 |
| exon | 180122 | 180677 |
| exon | 180736 | 180809 |
| exon | 183361 | 183417 |
| exon | 183784 | 183793 |
| exon | 183840 | 183927 |
| exon | 184000 | 184130 |
| exon | 184813 | 184886 |
| exon | 184974 | 185091 |
| exon | 185254 | 185324 |
| exon | 185426 | 188887 |
| CDS | 180176 | 180677 |
| CDS | 180736 | 180809 |
| CDS | 183361 | 183417 |
| CDS | 183784 | 183793 |
| CDS | 183840 | 183927 |
| CDS | 184000 | 184130 |
| CDS | 184813 | 184886 |
| CDS | 184974 | 185091 |
| CDS | 185254 | 185324 |
| CDS | 185426 | 185791 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13439.5 | Glyco_transf_4 | 107 | 267 |
| PF00534.19 | Glycos_transf_1 | 344 | 441 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009058 | biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.