Annotation of co-expression genes

PH01001102G0470's details annotation

1.Annotation

ICBR annotation: glycosyl hydrolases, putative, expressed

Blast result AT1G12240 : 0.00E+00
Blast annotation: Glycosyl hydrolases family 32 protein

2.Location

Scaffold: PH01001102
Strand: -

RegionStartEnd
gene304833310771
mRNA304833310771
exon304833307051
exon307731308620
exon310289310771
CDS306317307051
CDS307731308620
CDS310289310670

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000047isomerase activity,
Brassinosteroid_biosynthesis
carbohydrate metabolic process,
carbohydrate binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF11837.7DUF335715110
PF00251.19Glyco_hydro_32N118444
PF08244.11Glyco_hydro_32C447638

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Galactose metabolismbeta-fructofuranosidase [EC:3.2.1.26]ko00052K01193
Starch and sucrose metabolismbeta-fructofuranosidase [EC:3.2.1.26]ko00500K01193

10.Gene Ontology

GO AccessionGO Annotation
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004564beta-fructofuranosidase activity
GO:0004575sucrose alpha-glucosidase activity
GO:0005975carbohydrate metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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