Annotation of co-expression genes

PH01001104G0340's details annotation

1.Annotation

ICBR annotation: transcription factor jumonji, putative, expressed

Blast result AT1G30810 : 0
Blast annotation: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein

2.Location

Scaffold: PH01001104
Strand: +

RegionStartEnd
gene246224252779
mRNA246224252779
exon246224246687
exon247742247792
exon247906247983
exon248075248599
exon248682248903
exon249453249695
exon249997250365
exon250454251432
exon251536251639
exon251734251931
exon252034252779
CDS246559246687
CDS247742247792
CDS247906247983
CDS248075248599
CDS248682248903
CDS249453249695
CDS249997250365
CDS250454251432
CDS251536251639
CDS251734251931
CDS252034252267

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001874Endocytosis
Jumonji Transcription_Regulator(from iTAK)
bZIP Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)Jumonji

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02375.16JmjN79112
PF02373.21JmjC323394
PF02373.21JmjC413466
PF02928.15zf-C5HC2571623
PF05964.13FYRN848889
PF05965.13FYRC896980

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0005634nucleus

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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