Annotation of co-expression genes

PH01001104G0450's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT1G17980 : 3.00E-173
Blast annotation: poly(A) polymerase 1

2.Location

Scaffold: PH01001104
Strand: +

RegionStartEnd
gene315048320656
mRNA315048320656
exon315048315870
exon315970316047
exon316133316240
exon316534316596
exon316672316833
exon317078317191
exon317282317344
exon317510317686
exon318478318642
exon318736319659
exon320238320656
CDS315772315870
CDS315970316047
CDS316133316240
CDS316534316596
CDS316672316833
CDS317078317191
CDS317282317344
CDS317510317686
CDS318478318642
CDS318736319659
CDS320238320276

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04928.16PAP_central10299
PF01909.22NTP_transf_283137
PF04926.14PAP_RNA-bind306365
PF04926.14PAP_RNA-bind370436

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003723RNA binding
GO:0004652polynucleotide adenylyltransferase activity
GO:0005634nucleus
GO:0016779nucleotidyltransferase activity
GO:0031123RNA 3'-end processing
GO:0043631RNA polyadenylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.