PH01001108G0520's details annotation
1.Annotation
ICBR annotation: metallo-beta-lactamase family protein, putative, expressed
Blast result AT1G53580 : 4.00E-106
Blast annotation: glyoxalase II 3
2.Location
Scaffold: PH01001108
Strand: -
| Region | Start | End |
| gene | 351456 | 357535 |
| mRNA | 351456 | 357535 |
| exon | 351456 | 352491 |
| exon | 352667 | 352749 |
| exon | 352879 | 352903 |
| exon | 352991 | 353044 |
| exon | 354506 | 354565 |
| exon | 355009 | 355143 |
| exon | 356031 | 356138 |
| exon | 356240 | 356368 |
| exon | 357274 | 357535 |
| CDS | 352381 | 352491 |
| CDS | 352667 | 352749 |
| CDS | 352879 | 352903 |
| CDS | 352991 | 353044 |
| CDS | 354506 | 354565 |
| CDS | 355009 | 355143 |
| CDS | 356031 | 356138 |
| CDS | 356240 | 356368 |
| CDS | 357274 | 357399 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00753.26 | Lactamase_B | 25 | 171 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.