PH01001112G0470's details annotation
1.Annotation
ICBR annotation: haloacid dehalogenase, putative, expressed
Blast result AT3G58830 : 1.10E-47
Blast annotation: haloacid dehalogenase (HAD) superfamily protein
2.Location
Scaffold: PH01001112
Strand: -
| Region | Start | End |
| gene | 298595 | 301242 |
| mRNA | 298595 | 301242 |
| exon | 298595 | 298796 |
| exon | 299396 | 299503 |
| exon | 299591 | 299664 |
| exon | 300439 | 300622 |
| exon | 301135 | 301242 |
| CDS | 298656 | 298796 |
| CDS | 299396 | 299503 |
| CDS | 299591 | 299664 |
| CDS | 300439 | 300622 |
| CDS | 301135 | 301137 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09419.9 | PGP_phosphatase | 10 | 62 |
| PF09419.9 | PGP_phosphatase | 64 | 111 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.