PH01001115G0690's details annotation
1.Annotation
ICBR annotation: OTU-like cysteine protease family protein, putative, expressed
Blast result AT2G38025 : 1.50E-33
Blast annotation: Cysteine proteinases superfamily protein
2.Location
Scaffold: PH01001115
Strand: -
| Region | Start | End |
| gene | 386213 | 391193 |
| mRNA | 386213 | 391193 |
| exon | 386213 | 387513 |
| exon | 387830 | 387919 |
| exon | 388735 | 388788 |
| exon | 389254 | 389308 |
| exon | 389386 | 391193 |
| CDS | 387445 | 387513 |
| CDS | 387830 | 387919 |
| CDS | 388735 | 388788 |
| CDS | 389254 | 389308 |
| CDS | 389386 | 389516 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02338.18 | OTU | 20 | 101 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.