PH01001117G0450's details annotation
1.Annotation
ICBR annotation: soluble inorganic pyrophosphatase, putative, expressed
Blast result AT3G53620 : 5.00E-102
Blast annotation: pyrophosphorylase 4
2.Location
Scaffold: PH01001117
Strand: -
| Region | Start | End |
| gene | 313826 | 316380 |
| mRNA | 313826 | 316380 |
| exon | 313826 | 314384 |
| exon | 314420 | 314485 |
| exon | 314692 | 314799 |
| exon | 314900 | 314965 |
| exon | 315538 | 315566 |
| exon | 315666 | 316380 |
| CDS | 314166 | 314384 |
| CDS | 314420 | 314485 |
| CDS | 314692 | 314799 |
| CDS | 314900 | 314965 |
| CDS | 315538 | 315566 |
| CDS | 315666 | 315786 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00719.18 | Pyrophosphatase | 50 | 201 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | inorganic pyrophosphatase [EC:3.6.1.1] | ko00190 | K01507 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000287 | magnesium ion binding |
| GO:0004427 | inorganic diphosphatase activity |
| GO:0005737 | cytoplasm |
| GO:0006796 | phosphate-containing compound metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.