PH01001120G0290's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G17070 : 7.00E-40
Blast annotation: -
2.Location
Scaffold: PH01001120
Strand: +
| Region | Start | End |
| gene | 208199 | 214632 |
| mRNA | 208199 | 214632 |
| exon | 208199 | 208785 |
| exon | 210169 | 210249 |
| exon | 210621 | 210669 |
| exon | 210792 | 210900 |
| exon | 212332 | 212384 |
| exon | 212536 | 212598 |
| exon | 213448 | 213528 |
| exon | 213764 | 214632 |
| CDS | 208610 | 208785 |
| CDS | 210169 | 210249 |
| CDS | 210621 | 210669 |
| CDS | 210792 | 210900 |
| CDS | 212332 | 212384 |
| CDS | 212536 | 212598 |
| CDS | 213448 | 213528 |
| CDS | 213764 | 214117 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09184.10 | PPP4R2 | 69 | 191 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.