Annotation of co-expression genes

PH01001125G0090's details annotation

1.Annotation

ICBR annotation: lecithin cholesterol acyltransferase, putative, expressed

Blast result AT1G27480 : 1.00E-115
Blast annotation: alpha/beta-Hydrolases superfamily protein

2.Location

Scaffold: PH01001125
Strand: -

RegionStartEnd
gene5297555302
mRNA5297555302
exon5297554062
exon5418555302
CDS5314454062
CDS5418554609

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000024HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
photosystem I,
chlorophyll binding,
DNA binding,
Photosynthesis
regulation of transcription, DNA-dependent,
RLK-Pelle_LRR-Xa (from iTAK)
sequence-specific DNA binding,
Photosynthesis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02450.14LCAT83313

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006629lipid metabolic process
GO:0008374O-acyltransferase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.