PH01001127G0260's details annotation
1.Annotation
ICBR annotation: lysM domain-containing GPI-anchored protein precursor, putative, expressed
Blast result AT1G21880 : 3.80E-57
Blast annotation: lysm domain GPI-anchored protein 1 precursor
2.Location
Scaffold: PH01001127
Strand: -
| Region | Start | End |
| gene | 170935 | 176288 |
| mRNA | 170935 | 176288 |
| exon | 170935 | 172321 |
| exon | 172416 | 172580 |
| exon | 174478 | 174569 |
| exon | 175421 | 176288 |
| CDS | 171947 | 172321 |
| CDS | 172416 | 172580 |
| CDS | 174478 | 174569 |
| CDS | 175421 | 176105 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001594 | Steroid_biosynthesis cholestenol delta-isomerase activity, sterol metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01476.19 | LysM | 118 | 164 |
| PF01476.19 | LysM | 184 | 226 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016998 | cell wall macromolecule catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.