PH01001140G0500's details annotation
1.Annotation
ICBR annotation: tyrosine aminotransferase, putative, expressed
Blast result AT5G36160 : 1.00E-105
Blast annotation: Tyrosine transaminase family protein
2.Location
Scaffold: PH01001140
Strand: -
| Region | Start | End |
| gene | 341239 | 346200 |
| mRNA | 341239 | 346200 |
| exon | 341239 | 341558 |
| exon | 341593 | 341748 |
| exon | 342287 | 342346 |
| exon | 342420 | 342638 |
| exon | 342741 | 343110 |
| exon | 345784 | 346200 |
| CDS | 341550 | 341558 |
| CDS | 341593 | 341748 |
| CDS | 342287 | 342346 |
| CDS | 342420 | 342638 |
| CDS | 342741 | 343110 |
| CDS | 345784 | 346106 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00155.20 | Aminotran_1_2 | 60 | 376 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0006520 | cellular amino acid metabolic process |
| GO:0008483 | transaminase activity |
| GO:0009058 | biosynthetic process |
| GO:0030170 | pyridoxal phosphate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.