PH01001142G0110's details annotation
1.Annotation
ICBR annotation: 60S ribosomal protein L6, putative, expressed
Blast result AT1G74050 : 1.90E-73
Blast annotation: Ribosomal protein L6 family protein
2.Location
Scaffold: PH01001142
Strand: +
| Region | Start | End |
| gene | 67346 | 70831 |
| mRNA | 67346 | 70831 |
| exon | 67346 | 67857 |
| exon | 67938 | 68044 |
| exon | 70040 | 70221 |
| exon | 70315 | 70831 |
| CDS | 67643 | 67857 |
| CDS | 67938 | 68044 |
| CDS | 70040 | 70221 |
| CDS | 70315 | 70470 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01159.18 | Ribosomal_L6e | 112 | 219 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L6e | ko03011 | K02934 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.