Annotation of co-expression genes

PH01001143G0250's details annotation

1.Annotation

ICBR annotation: Os5bglu22 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed

Blast result AT3G18070 : 4.20E-45
Blast annotation: beta glucosidase 43

2.Location

Scaffold: PH01001143
Strand: -

RegionStartEnd
gene172944179302
mRNA172944179302
exon172944173456
exon173544173634
exon174860174888
exon175183175326
exon175434175549
exon175957176018
exon176120176195
exon176928176986
exon177671177734
exon177888179302
CDS173225173456
CDS173544173634
CDS174860174888
CDS175183175326
CDS175434175549
CDS175957176018
CDS176120176195
CDS176928176986
CDS177671177734
CDS177888178052

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000016protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
protein serine/threonine kinase activity,
ATP binding,
RLK-Pelle_LRR-XII-1 (from iTAK)
RLK-Pelle_DLSV (from iTAK)
RLK-Pelle_WAK (from iTAK)
ADP_binding
polysaccharide_binding
transmembrane_transporter_activity
WRKY Transcription_Regulator(from PlantTFDB)
recognition of pollen,
transmembrane transport,
defense response,
RLK-Pelle_L-LEC (from iTAK)
membrane,
integral to membrane,
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
ATPase activity,
substrate-specific transmembrane transporter activity,
RLK-Pelle_LRR-XI-1 (from iTAK)
6-phosphofructokinase complex,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00232.17Glyco_hydro_138144
PF00232.17Glyco_hydro_1145232
PF00232.17Glyco_hydro_1244325

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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