PH01001149G0380's details annotation
1.Annotation
ICBR annotation: PPR repeat containing protein, putative, expressed
Blast result AT1G79540 : 1.00E-136
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01001149
Strand: +
| Region | Start | End |
| gene | 282630 | 288215 |
| mRNA | 282630 | 288215 |
| exon | 282630 | 285390 |
| exon | 285467 | 286189 |
| exon | 286803 | 286862 |
| exon | 287688 | 288215 |
| CDS | 284304 | 285390 |
| CDS | 285467 | 286189 |
| CDS | 286803 | 286862 |
| CDS | 287688 | 287722 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13041.5 | PPR_2 | 8 | 56 |
| PF13041.5 | PPR_2 | 78 | 127 |
| PF01535.19 | PPR | 153 | 181 |
| PF13041.5 | PPR_2 | 183 | 232 |
| PF12854.6 | PPR_1 | 250 | 281 |
| PF12854.6 | PPR_1 | 285 | 317 |
| PF13041.5 | PPR_2 | 360 | 396 |
| PF01535.19 | PPR | 422 | 443 |
| PF01535.19 | PPR | 494 | 522 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.