Annotation of co-expression genes

PH01001174G0420's details annotation

1.Annotation

ICBR annotation: protein kinase, putative, expressed

Blast result AT2G45910 : 2.00E-130
Blast annotation: U-box domain-containing protein kinase family protein

2.Location

Scaffold: PH01001174
Strand: +

RegionStartEnd
gene270712276433
mRNA270712276433
exon270712271405
exon271505271835
exon272379272464
exon272723272946
exon273018273084
exon273616273735
exon274146274631
exon274798275559
exon275756276433
CDS271223271405
CDS271505271835
CDS272379272464
CDS272723272946
CDS273018273084
CDS273616273735
CDS274146274631
CDS274798275559
CDS275756275950

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13414.5TPR_11173207
PF00069.24Pkinase459703
PF04564.14U-box743813

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000151ubiquitin ligase complex
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0004842ubiquitin-protein ligase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016567protein ubiquitination
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.