PH01001174G0480's details annotation
1.Annotation
ICBR annotation: OsMADS5 - MADS-box family gene with MIKCc type-box, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01001174
Strand: +
| Region | Start | End |
| gene | 314649 | 318514 |
| mRNA | 314649 | 318514 |
| exon | 314649 | 315434 |
| exon | 316478 | 316606 |
| exon | 316789 | 316830 |
| exon | 316913 | 316954 |
| exon | 317692 | 317828 |
| exon | 318230 | 318514 |
| CDS | 315282 | 315434 |
| CDS | 316478 | 316606 |
| CDS | 316789 | 316830 |
| CDS | 316913 | 316954 |
| CDS | 317692 | 317828 |
| CDS | 318230 | 318269 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01486.16 | K-box | 60 | 124 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.