PH01001175G0280's details annotation
1.Annotation
ICBR annotation: OsIAA15 - Auxin-responsive Aux/IAA gene family member, expressed
Blast result AT1G04250 : 1.80E-34
Blast annotation: AUX/IAA transcriptional regulator family protein
2.Location
Scaffold: PH01001175
Strand: -
| Region | Start | End |
| gene | 252670 | 253724 |
| mRNA | 252670 | 253724 |
| exon | 252670 | 252829 |
| exon | 252914 | 253113 |
| exon | 253195 | 253724 |
| CDS | 252711 | 252829 |
| CDS | 252914 | 253113 |
| CDS | 253195 | 253388 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000348 | transferase activity, transferring hexosyl groups, RLK-Pelle_RLCK-VIIa-2 (from iTAK) AUX/IAA Transcription_Regulator(from iTAK) CAMK_CAMKL-CHK1 (from iTAK) Drug_metabolism_-_other_enzymes Ascorbate_and_aldarate_metabolism Metabolism_of_xenobiotics_by_cytochrome_P450 Drug_metabolism_-_cytochrome_P450 Porphyrin_and_chlorophyll_metabolism Pentose_and_glucuronate_interconversions Steroid_hormone_biosynthesis Retinol_metabolism |
| coexpression network | CFinderM001005 | GT43 GlycosylTransferases AUX/IAA Transcription_Regulator(from iTAK) RLK-Pelle_RLCK-VIIa-2 (from iTAK) Glutathione_metabolism Pentose_phosphate_pathway glucose metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | AUX/IAA |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02309.15 | AUX_IAA | 41 | 193 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.