PH01001175G0320's details annotation
1.Annotation
ICBR annotation: splicing factor, putative, expressed
Blast result AT5G37370 : 1.00E-108
Blast annotation: PRP38 family protein
2.Location
Scaffold: PH01001175
Strand: +
| Region | Start | End |
| gene | 280257 | 285099 |
| mRNA | 280257 | 285099 |
| exon | 280257 | 281691 |
| exon | 282117 | 282197 |
| exon | 282586 | 282657 |
| exon | 283264 | 285099 |
| CDS | 281404 | 281691 |
| CDS | 282117 | 282197 |
| CDS | 282586 | 282657 |
| CDS | 283264 | 284031 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03371.14 | PRP38 | 11 | 161 |
| PF12871.6 | PRP38_assoc | 177 | 271 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | pre-mRNA-splicing factor 38B | ko03041 | K12850 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.