PH01001177G0030's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G42430 : 1.00E-105
Blast annotation: -
2.Location
Scaffold: PH01001177
Strand: -
| Region | Start | End |
| gene | 11291 | 19423 |
| mRNA | 11291 | 19423 |
| exon | 11291 | 11755 |
| exon | 11865 | 11939 |
| exon | 12156 | 12195 |
| exon | 13093 | 13300 |
| exon | 13924 | 14200 |
| exon | 15169 | 15294 |
| exon | 15377 | 15454 |
| exon | 16719 | 16841 |
| exon | 17021 | 17091 |
| exon | 17696 | 17889 |
| exon | 18044 | 18135 |
| exon | 18377 | 19423 |
| CDS | 11590 | 11755 |
| CDS | 11865 | 11939 |
| CDS | 12156 | 12195 |
| CDS | 13093 | 13300 |
| CDS | 13924 | 14200 |
| CDS | 15169 | 15294 |
| CDS | 15377 | 15454 |
| CDS | 16719 | 16841 |
| CDS | 17021 | 17091 |
| CDS | 17696 | 17889 |
| CDS | 18044 | 18135 |
| CDS | 18377 | 18666 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.