PH01001178G0500's details annotation
1.Annotation
ICBR annotation: PPR repeat containing protein, expressed
Blast result AT2G16880 : 8.00E-130
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01001178
Strand: +
| Region | Start | End |
| gene | 309500 | 316243 |
| mRNA | 309500 | 316243 |
| exon | 309500 | 310418 |
| exon | 311100 | 311130 |
| exon | 311737 | 311881 |
| exon | 311973 | 312043 |
| exon | 312131 | 312334 |
| exon | 312391 | 312488 |
| exon | 314040 | 316243 |
| CDS | 310207 | 310418 |
| CDS | 311100 | 311130 |
| CDS | 311737 | 311881 |
| CDS | 311973 | 312043 |
| CDS | 312131 | 312334 |
| CDS | 312391 | 312488 |
| CDS | 314040 | 315870 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13041.5 | PPR_2 | 311 | 360 |
| PF12854.6 | PPR_1 | 378 | 410 |
| PF13041.5 | PPR_2 | 417 | 466 |
| PF13041.5 | PPR_2 | 487 | 536 |
| PF13041.5 | PPR_2 | 557 | 606 |
| PF13041.5 | PPR_2 | 627 | 675 |
| PF13041.5 | PPR_2 | 698 | 744 |
| PF01535.19 | PPR | 808 | 836 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.