Annotation of co-expression genes

PH01001182G0420's details annotation

1.Annotation

ICBR annotation: solute carrier family 35 member B1, putative, expressed

Blast result AT1G14360 : 3.00E-141
Blast annotation: UDP-galactose transporter 3

2.Location

Scaffold: PH01001182
Strand: -

RegionStartEnd
gene314789322949
mRNA314789322949
exon314789316098
exon316319316424
exon318865319264
exon319353319474
exon319925320028
exon321307321337
exon321743321781
exon322160322186
exon322265322401
exon322524322621
exon322721322949
CDS315119316098
CDS316319316424
CDS318865319264
CDS319353319474
CDS319925320028
CDS321307321337
CDS321743321781
CDS322160322186
CDS322265322401
CDS322524322621
CDS322721322890

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001216Protein_processing_in_endoplasmic_reticulum
isomerase activity,
glycerol ether metabolic process,
protein disulfide oxidoreductase activity,
unfolded protein binding,
cell redox homeostasis,
protein folding,
endoplasmic reticulum,
electron carrier activity,
Protein_export
coexpression networkCFinderM001451Protein_processing_in_endoplasmic_reticulum
Protein_export
mitosis,
protein retention in ER lumen,
ER retention sequence binding,
spliceosomal complex,
glycerol ether metabolic process,
isomerase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08449.10UAA37138
PF08449.10UAA157370
PF03732.16Retrotrans_gag558650

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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