PH01001186G0290's details annotation
1.Annotation
ICBR annotation: glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
Blast result AT3G51840 : 3.80E-43
Blast annotation: acyl-CoA oxidase 4
2.Location
Scaffold: PH01001186
Strand: +
| Region | Start | End |
| gene | 178451 | 182695 |
| mRNA | 178451 | 182695 |
| exon | 178451 | 179683 |
| exon | 180060 | 180176 |
| exon | 181006 | 181112 |
| exon | 181390 | 181467 |
| exon | 182164 | 182315 |
| exon | 182427 | 182505 |
| exon | 182597 | 182695 |
| CDS | 179458 | 179683 |
| CDS | 180060 | 180176 |
| CDS | 181006 | 181112 |
| CDS | 181390 | 181467 |
| CDS | 182164 | 182315 |
| CDS | 182427 | 182505 |
| CDS | 182597 | 182677 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02771.15 | Acyl-CoA_dh_N | 126 | 175 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003995 | acyl-CoA dehydrogenase activity |
| GO:0008152 | metabolic process |
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.