PH01001189G0320's details annotation
1.Annotation
ICBR annotation: MIM, putative, expressed
Blast result AT5G07660 : 7.80E-84
Blast annotation: structural maintenance of chromosomes 6A
2.Location
Scaffold: PH01001189
Strand: -
| Region | Start | End |
| gene | 262823 | 268798 |
| mRNA | 262823 | 268798 |
| exon | 262823 | 263427 |
| exon | 263533 | 263647 |
| exon | 263744 | 263872 |
| exon | 263937 | 264141 |
| exon | 265757 | 265869 |
| exon | 266132 | 266234 |
| exon | 266317 | 266483 |
| exon | 267312 | 267416 |
| exon | 267515 | 267589 |
| exon | 267889 | 268798 |
| CDS | 263258 | 263427 |
| CDS | 263533 | 263647 |
| CDS | 263744 | 263872 |
| CDS | 263937 | 264141 |
| CDS | 265757 | 265869 |
| CDS | 266132 | 266234 |
| CDS | 266317 | 266483 |
| CDS | 267312 | 267416 |
| CDS | 267515 | 267589 |
| CDS | 267889 | 267975 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000724 | double-strand break repair via homologous recombination |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0005694 | chromosome |
| GO:0006281 | DNA repair |
| GO:0030915 | Smc5-Smc6 complex |
| GO:0051276 | chromosome organization |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.