PH01001191G0450's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G31510 : 9.80E-31
Blast annotation: IBR domain-containing protein
2.Location
Scaffold: PH01001191
Strand: -
| Region | Start | End |
| gene | 271165 | 279609 |
| mRNA | 271165 | 279609 |
| exon | 271165 | 272196 |
| exon | 272532 | 272633 |
| exon | 273842 | 274240 |
| exon | 275340 | 277229 |
| exon | 278045 | 279609 |
| CDS | 271663 | 272196 |
| CDS | 272532 | 272633 |
| CDS | 273842 | 274240 |
| CDS | 275340 | 277229 |
| CDS | 278045 | 278227 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000004 | RLK-Pelle_LRR-XI-1 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13968.5 | DUF4220 | 96 | 227 |
| PF13968.5 | DUF4220 | 314 | 381 |
| PF04578.12 | DUF594 | 620 | 668 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.