PH01001209G0230's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G02030 : 7.00E-107
Blast annotation: Vps51/Vps67 family (components of vesicular transport) protein
2.Location
Scaffold: PH01001209
Strand: -
| Region | Start | End |
| gene | 171329 | 178848 |
| mRNA | 171329 | 178848 |
| exon | 171329 | 171508 |
| exon | 171608 | 171708 |
| exon | 171954 | 172028 |
| exon | 172533 | 172561 |
| exon | 174492 | 174543 |
| exon | 174598 | 174675 |
| exon | 174893 | 174970 |
| exon | 175059 | 175157 |
| exon | 175941 | 176184 |
| exon | 176316 | 176455 |
| exon | 176842 | 176896 |
| exon | 177919 | 178848 |
| CDS | 171469 | 171508 |
| CDS | 171608 | 171708 |
| CDS | 171954 | 172028 |
| CDS | 172533 | 172561 |
| CDS | 174492 | 174543 |
| CDS | 174598 | 174675 |
| CDS | 174893 | 174970 |
| CDS | 175059 | 175157 |
| CDS | 175941 | 176184 |
| CDS | 176316 | 176455 |
| CDS | 176842 | 176896 |
| CDS | 177919 | 178202 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08700.10 | Vps51 | 60 | 144 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.