PH01001214G0280's details annotation
1.Annotation
ICBR annotation: SIT4 phosphatase-associated protein domain containing protein, expressed
Blast result AT1G30470 : 1.00E-176
Blast annotation: SIT4 phosphatase-associated family protein
2.Location
Scaffold: PH01001214
Strand: -
| Region | Start | End |
| gene | 160136 | 174370 |
| mRNA | 160136 | 174370 |
| exon | 160136 | 161214 |
| exon | 161306 | 161376 |
| exon | 161504 | 161533 |
| exon | 161912 | 162053 |
| exon | 163187 | 163269 |
| exon | 164027 | 164192 |
| exon | 164260 | 164363 |
| exon | 164655 | 164738 |
| exon | 165264 | 165361 |
| exon | 165802 | 166004 |
| exon | 166427 | 166535 |
| exon | 167053 | 167080 |
| exon | 167472 | 167588 |
| exon | 167812 | 167871 |
| exon | 168341 | 168394 |
| exon | 168515 | 168589 |
| exon | 168695 | 168770 |
| exon | 168857 | 168943 |
| exon | 170334 | 170446 |
| exon | 172661 | 174370 |
| CDS | 160587 | 161214 |
| CDS | 161306 | 161376 |
| CDS | 161504 | 161533 |
| CDS | 161912 | 162053 |
| CDS | 163187 | 163269 |
| CDS | 164027 | 164192 |
| CDS | 164260 | 164363 |
| CDS | 164655 | 164738 |
| CDS | 165264 | 165361 |
| CDS | 165802 | 166004 |
| CDS | 166427 | 166535 |
| CDS | 167053 | 167080 |
| CDS | 167472 | 167588 |
| CDS | 167812 | 167871 |
| CDS | 168341 | 168394 |
| CDS | 168515 | 168589 |
| CDS | 168695 | 168770 |
| CDS | 168857 | 168943 |
| CDS | 170334 | 170446 |
| CDS | 172661 | 172726 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000862 | DBP Transcription_Regulator(from iTAK) Golgi stack, GPI-anchor transamidase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04499.14 | SAPS | 143 | 218 |
| PF04499.14 | SAPS | 408 | 475 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.