PH01001221G0500's details annotation
1.Annotation
ICBR annotation: ribosomal protein L6, putative, expressed
Blast result AT1G33140 : 7.70E-77
Blast annotation: Ribosomal protein L6 family
2.Location
Scaffold: PH01001221
Strand: -
| Region | Start | End |
| gene | 345533 | 349038 |
| mRNA | 345533 | 349038 |
| exon | 345533 | 345858 |
| exon | 346186 | 346268 |
| exon | 347358 | 347480 |
| exon | 348306 | 349038 |
| CDS | 345741 | 345858 |
| CDS | 346186 | 346268 |
| CDS | 347358 | 347480 |
| CDS | 348306 | 348641 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00347.22 | Ribosomal_L6 | 3 | 77 |
| PF00347.22 | Ribosomal_L6 | 90 | 168 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L9e | ko03011 | K02940 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
| GO:0019843 | rRNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.