PH01001225G0350's details annotation
1.Annotation
ICBR annotation: SWIRM domain containing protein, expressed
Blast result AT1G21700 : 6.90E-81
Blast annotation: SWITCH/sucrose nonfermenting 3C
2.Location
Scaffold: PH01001225
Strand: +
| Region | Start | End |
| gene | 263177 | 271979 |
| mRNA | 263177 | 271979 |
| exon | 263177 | 264886 |
| exon | 267712 | 268032 |
| exon | 269141 | 269229 |
| exon | 269405 | 269457 |
| exon | 269601 | 269683 |
| exon | 270552 | 271979 |
| CDS | 264605 | 264886 |
| CDS | 267712 | 268032 |
| CDS | 269141 | 269229 |
| CDS | 269405 | 269457 |
| CDS | 269601 | 269683 |
| CDS | 270552 | 271073 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB-related |
| Transcription_Regulator(from PlantTFDB) | MYB_related |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 148 | 189 |
| PF16495.4 | SWIRM-assoc_1 | 248 | 320 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.