PH01001244G0260's details annotation
1.Annotation
ICBR annotation: glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed
Blast result AT5G48300 : 0
Blast annotation: ADP glucose pyrophosphorylase 1
2.Location
Scaffold: PH01001244
Strand: +
| Region | Start | End |
| gene | 183284 | 188525 |
| mRNA | 183284 | 188525 |
| exon | 183284 | 183697 |
| exon | 184301 | 184597 |
| exon | 185006 | 185023 |
| exon | 185250 | 185519 |
| exon | 185640 | 185819 |
| exon | 186035 | 186138 |
| exon | 186298 | 186358 |
| exon | 186412 | 186471 |
| exon | 186817 | 186915 |
| exon | 186991 | 187110 |
| exon | 187598 | 188525 |
| CDS | 183458 | 183697 |
| CDS | 184301 | 184597 |
| CDS | 185006 | 185023 |
| CDS | 185250 | 185519 |
| CDS | 185640 | 185819 |
| CDS | 186035 | 186138 |
| CDS | 186298 | 186358 |
| CDS | 186412 | 186471 |
| CDS | 186817 | 186915 |
| CDS | 186991 | 187110 |
| CDS | 187598 | 187714 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00483.22 | NTP_transferase | 84 | 363 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005978 | glycogen biosynthetic process |
| GO:0009058 | biosynthetic process |
| GO:0016740 | transferase activity |
| GO:0016779 | nucleotidyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.