PH01001247G0540's details annotation
1.Annotation
ICBR annotation: coatomer subunit beta, putative, expressed
Blast result AT1G52360 : 0.00E+00
Blast annotation: Coatomer, beta subunit
2.Location
Scaffold: PH01001247
Strand: +
| Region | Start | End |
| gene | 351256 | 364256 |
| mRNA | 351256 | 364256 |
| exon | 351256 | 353705 |
| exon | 353926 | 353987 |
| exon | 354111 | 354165 |
| exon | 354922 | 355247 |
| exon | 355356 | 355487 |
| exon | 355556 | 355704 |
| exon | 357559 | 357627 |
| exon | 357998 | 358172 |
| exon | 358239 | 358304 |
| exon | 358797 | 358985 |
| exon | 359774 | 359914 |
| exon | 360006 | 360080 |
| exon | 360266 | 360442 |
| exon | 361089 | 361187 |
| exon | 361598 | 361794 |
| exon | 361887 | 361980 |
| exon | 362241 | 362347 |
| exon | 362541 | 362694 |
| exon | 363854 | 364256 |
| CDS | 353519 | 353705 |
| CDS | 353926 | 353987 |
| CDS | 354111 | 354165 |
| CDS | 354922 | 355247 |
| CDS | 355356 | 355487 |
| CDS | 355556 | 355704 |
| CDS | 357559 | 357627 |
| CDS | 357998 | 358172 |
| CDS | 358239 | 358304 |
| CDS | 358797 | 358985 |
| CDS | 359774 | 359914 |
| CDS | 360006 | 360080 |
| CDS | 360266 | 360442 |
| CDS | 361089 | 361187 |
| CDS | 361598 | 361794 |
| CDS | 361887 | 361980 |
| CDS | 362241 | 362347 |
| CDS | 362541 | 362694 |
| CDS | 363854 | 363997 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 133 | 169 |
| PF00400.31 | WD40 | 175 | 213 |
| PF00400.31 | WD40 | 219 | 257 |
| PF00400.31 | WD40 | 262 | 298 |
| PF04053.13 | Coatomer_WDAD | 374 | 606 |
| PF04053.13 | Coatomer_WDAD | 612 | 714 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005198 | structural molecule activity |
| GO:0005515 | protein binding |
| GO:0006886 | intracellular protein transport |
| GO:0016192 | vesicle-mediated transport |
| GO:0030117 | membrane coat |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.