Annotation of co-expression genes

PH01001255G0050's details annotation

1.Annotation

ICBR annotation: calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed

Blast result AT1G07670 : 0.00E+00
Blast annotation: endomembrane-type CA-ATPase 4

2.Location

Scaffold: PH01001255
Strand: +

RegionStartEnd
gene3990146363
mRNA3990146363
exon3990140886
exon4105941532
exon4213842236
exon4238742453
exon4255642680
exon4312743405
exon4352143898
exon4471444823
exon4492845156
exon4557646363
CDS4076140886
CDS4105941532
CDS4213842236
CDS4238742453
CDS4255642680
CDS4312743405
CDS4352143898
CDS4471444823
CDS4492845156
CDS4557646151

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00122.19E1-E2_ATPase116190
PF13246.5Cation_ATPase207309
PF00702.25Hydrolase381505
PF00689.20Cation_ATPase_C576802

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0006812cation transport
GO:0016021integral to membrane
GO:0019829cation-transporting ATPase activity
GO:0046872metal ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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