PH01001260G0160's details annotation
1.Annotation
ICBR annotation: GTP-binding protein, putative, expressed
Blast result AT1G56050 : 3.00E-155
Blast annotation: GTP-binding protein-related
2.Location
Scaffold: PH01001260
Strand: -
| Region | Start | End |
| gene | 131909 | 136619 |
| mRNA | 131909 | 136619 |
| exon | 131909 | 132271 |
| exon | 132368 | 132427 |
| exon | 132593 | 132663 |
| exon | 132764 | 132791 |
| exon | 132871 | 133017 |
| exon | 133128 | 133382 |
| exon | 133446 | 133508 |
| exon | 133691 | 133801 |
| exon | 134938 | 135048 |
| exon | 135452 | 135505 |
| exon | 135626 | 135814 |
| exon | 136285 | 136619 |
| CDS | 132203 | 132271 |
| CDS | 132368 | 132427 |
| CDS | 132593 | 132663 |
| CDS | 132764 | 132791 |
| CDS | 132871 | 133017 |
| CDS | 133128 | 133382 |
| CDS | 133446 | 133508 |
| CDS | 133691 | 133801 |
| CDS | 134938 | 135048 |
| CDS | 135452 | 135505 |
| CDS | 135626 | 135814 |
| CDS | 136285 | 136530 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01926.22 | MMR_HSR1 | 65 | 176 |
| PF06071.12 | YchF-GTPase_C | 383 | 466 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005525 | GTP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.