PH01001261G0410's details annotation
1.Annotation
ICBR annotation: OsCML12 - Calmodulin-related calcium sensor protein, expressed
Blast result AT3G25600 : 8.10E-49
Blast annotation: Calcium-binding EF-hand family protein
2.Location
Scaffold: PH01001261
Strand: +
| Region | Start | End |
| gene | 257429 | 258924 |
| mRNA | 257429 | 258924 |
| exon | 257429 | 258924 |
| CDS | 257976 | 258527 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000084 | cell wall macromolecule catabolic process, chitin catabolic process, WRKY Transcription_Regulator(from PlantTFDB) defense response to fungus, ammonium_transport ammonium_transmembrane_transport defense response to bacterium, metabolic process, chitinase activity, |
| coexpression network | CFinderM000286 | chitin binding, chitin catabolic process, cell wall macromolecule catabolic process, chitinase activity, Amino_sugar_and_nucleotide_sugar_metabolism carbohydrate metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13499.5 | EF-hand_7 | 67 | 125 |
| PF13499.5 | EF-hand_7 | 147 | 208 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005509 | calcium ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.