PH01001271G0230's details annotation
1.Annotation
ICBR annotation: DUF538 domain containing protein, putative, expressed
Blast result AT1G09310 : 1.60E-30
Blast annotation: Protein of unknown function, DUF538
2.Location
Scaffold: PH01001271
Strand: +
| Region | Start | End |
| gene | 175143 | 175873 |
| mRNA | 175143 | 175873 |
| exon | 175143 | 175873 |
| CDS | 175254 | 175760 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000469 | CCAAT-binding factor complex, NF-YA Transcription_Regulator(from PlantTFDB) response to biotic stimulus, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04398.11 | DUF538 | 27 | 140 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.