PH01001288G0210's details annotation
1.Annotation
ICBR annotation: HECT-domain domain containing protein, expressed
Blast result AT4G12570 : 5.90E-85
Blast annotation: ubiquitin protein ligase 5
2.Location
Scaffold: PH01001288
Strand: -
| Region | Start | End |
| gene | 142917 | 146616 |
| mRNA | 142917 | 146616 |
| exon | 142917 | 143257 |
| exon | 144195 | 144778 |
| exon | 145821 | 146063 |
| exon | 146099 | 146616 |
| CDS | 142994 | 143257 |
| CDS | 144195 | 144778 |
| CDS | 145821 | 146063 |
| CDS | 146099 | 146111 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00632.24 | HECT | 72 | 359 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004842 | ubiquitin-protein ligase activity |
| GO:0005622 | intracellular |
| GO:0006464 | cellular protein modification process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.