PH01001308G0140's details annotation
1.Annotation
ICBR annotation: PHD-finger domain containing protein, putative, expressed
Blast result AT1G77800 : 2.00E-112
Blast annotation: PHD finger family protein
2.Location
Scaffold: PH01001308
Strand: -
| Region | Start | End |
| gene | 113246 | 126347 |
| mRNA | 113246 | 126347 |
| exon | 113246 | 113818 |
| exon | 113892 | 114260 |
| exon | 114843 | 114902 |
| exon | 115392 | 115445 |
| exon | 115832 | 115969 |
| exon | 116063 | 116128 |
| exon | 116403 | 116624 |
| exon | 116695 | 116919 |
| exon | 117004 | 117257 |
| exon | 117460 | 117669 |
| exon | 117784 | 117887 |
| exon | 118045 | 118240 |
| exon | 120001 | 120067 |
| exon | 120687 | 121139 |
| exon | 121214 | 121297 |
| exon | 121393 | 121761 |
| exon | 121843 | 121928 |
| exon | 124543 | 126347 |
| CDS | 113651 | 113818 |
| CDS | 113892 | 114260 |
| CDS | 114843 | 114902 |
| CDS | 115392 | 115445 |
| CDS | 115832 | 115969 |
| CDS | 116063 | 116128 |
| CDS | 116403 | 116624 |
| CDS | 116695 | 116919 |
| CDS | 117004 | 117257 |
| CDS | 117460 | 117669 |
| CDS | 117784 | 117887 |
| CDS | 118045 | 118240 |
| CDS | 120001 | 120067 |
| CDS | 120687 | 121139 |
| CDS | 121214 | 121297 |
| CDS | 121393 | 121761 |
| CDS | 121843 | 121928 |
| CDS | 124543 | 125854 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001820 | mediator complex, CBM43 Carbohydrate-Binding_Modules GH17 Glycoside_Hydrolases |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13831.5 | PHD_2 | 302 | 334 |
| PF13832.5 | zf-HC5HC2H_2 | 355 | 476 |
| PF13832.5 | zf-HC5HC2H_2 | 1200 | 1256 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.