PH01001310G0380's details annotation
1.Annotation
ICBR annotation: ZOS1-11 - C2H2 zinc finger protein, expressed
Blast result AT2G19385 : 6.70E-60
Blast annotation: zinc ion binding
2.Location
Scaffold: PH01001310
Strand: +
| Region | Start | End |
| gene | 321493 | 325017 |
| mRNA | 321493 | 325017 |
| exon | 321493 | 322325 |
| exon | 322932 | 323059 |
| exon | 323682 | 324135 |
| exon | 324237 | 324350 |
| exon | 324533 | 325017 |
| CDS | 322047 | 322325 |
| CDS | 322932 | 323059 |
| CDS | 323682 | 324135 |
| CDS | 324237 | 324350 |
| CDS | 324533 | 324604 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08790.10 | zf-LYAR | 69 | 96 |
| PF12874.6 | zf-met | 133 | 157 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.