PH01001324G0200's details annotation
1.Annotation
ICBR annotation: pentatricopeptide repeat protein, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01001324
Strand: +
| Region | Start | End |
| gene | 107823 | 114043 |
| mRNA | 107823 | 114043 |
| exon | 107823 | 109118 |
| exon | 109183 | 109287 |
| exon | 111298 | 111466 |
| exon | 111610 | 111732 |
| exon | 112389 | 112581 |
| exon | 112677 | 114043 |
| CDS | 109112 | 109118 |
| CDS | 109183 | 109287 |
| CDS | 111298 | 111466 |
| CDS | 111610 | 111732 |
| CDS | 112389 | 112581 |
| CDS | 112677 | 113081 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000154 | GT37 GlycosylTransferases cell wall biogenesis, cell death, protein catabolic process, Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis galactoside 2-alpha-L-fucosyltransferase activity, integral to membrane, membrane, mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.