PH01001325G0420's details annotation
1.Annotation
ICBR annotation: heavy-metal-associated domain-containing protein, putative, expressed
Blast result AT2G28090 : 2.50E-15
Blast annotation: Heavy metal transport/detoxification superfamily protein
2.Location
Scaffold: PH01001325
Strand: +
| Region | Start | End |
| gene | 256485 | 258744 |
| mRNA | 256485 | 258744 |
| exon | 256485 | 256989 |
| exon | 257095 | 257384 |
| exon | 257495 | 257573 |
| exon | 257681 | 258744 |
| CDS | 256833 | 256989 |
| CDS | 257095 | 257384 |
| CDS | 257495 | 257573 |
| CDS | 257681 | 258168 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00403.25 | HMA | 31 | 83 |
| PF00403.25 | HMA | 154 | 200 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0030001 | metal ion transport |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.