Annotation of co-expression genes

PH01001334G0350's details annotation

1.Annotation

ICBR annotation: NOC3 - Putative nucleolar complex subunit 3, expressed

Blast result AT1G79150 : 0.00E+00
Blast annotation: binding

2.Location

Scaffold: PH01001334
Strand: +

RegionStartEnd
gene255772264928
mRNA255772264928
exon255772256429
exon257622257812
exon259212259420
exon259501259603
exon259830259993
exon260451260589
exon260730260900
exon260976261112
exon261278261592
exon262110262249
exon262664262761
exon262847263333
exon264187264928
CDS256078256429
CDS257622257812
CDS259212259420
CDS259501259603
CDS259830259993
CDS260451260589
CDS260730260900
CDS260976261112
CDS261278261592
CDS262110262249
CDS262664262761
CDS262847263333
CDS264187264344

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07540.10NOC3p197287
PF03914.16CBF555710

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005488binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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